add other rate for strain table and create table for all three strain table

data/OverallSchema.sql

@@ -121,6 +121,7 @@ CREATE TABLE Strains_Per_Country(
     gamma_rate FLOAT NULL,
     delta_rate FLOAT NULL,
     omicron_rate FLOAT NULL,
+    other_rate FLOAT NULL,
     FOREIGN KEY (country_code) REFERENCES Countries(country_code),
     FOREIGN KEY (source_id) REFERENCES Sources(source_id));
 
@@ -135,6 +136,7 @@ CREATE TABLE Strains_Per_Region(
     gamma_rate FLOAT NULL,
     delta_rate FLOAT NULL,
     omicron_rate FLOAT NULL,
+    other_rate FLOAT NULL,
     FOREIGN KEY (region_code) REFERENCES Regions(region_code),
     FOREIGN KEY (source_id) REFERENCES Sources(source_id)
 );
@@ -149,6 +151,7 @@ CREATE TABLE Strains_Per_District(
     gamma_rate FLOAT NULL,
     delta_rate FLOAT NULL,
     omicron_rate FLOAT NULL,
+    other_rate FLOAT NULL,
     FOREIGN KEY (district_code) REFERENCES Districts(district_code),
     FOREIGN KEY (source_id) REFERENCES Sources(source_id)
 );

initial_data_scripts/init_north_america.py

@@ -194,8 +194,9 @@ def init_canada():
                 ca_strain[row["Collection (week)"]] = {"Alpha":0 , "Beta": 0, "Gamma" :0, "Delta": 0, "Omicron": 0}
             ca_strain[row["Collection (week)"]][row["_Identifier"]] = ca_strain[row["Collection (week)"]][row["_Identifier"]] + row["%CT Count of Sample #"]   
     for date in ca_strain:
-        sql = '''INSERT INTO Strains_Per_Country (date_collected, country_code, source_id, alpha_rate, beta_rate, gamma_rate, delta_rate, omicron_rate) VALUES (?, ?, ?, ?, ?, ?, ?, ?)'''
-        c.execute(sql,(date, ca_code, ca_src, ca_strain[date]["Alpha"], ca_strain[date]["Beta"], ca_strain[date]["Gamma"],ca_strain[date]["Delta"], ca_strain[date]["Omicron"]))
+        other_rate = max(1 - ca_strain[date]["Alpha"] - ca_strain[date]["Beta"] - ca_strain[date]["Gamma"] -  ca_strain[date]["Delta"] - ca_strain[date]["Omicron"], 0)
+        sql = '''INSERT INTO Strains_Per_Country (date_collected, country_code, source_id, alpha_rate, beta_rate, gamma_rate, delta_rate, omicron_rate, other_rate) VALUES (?, ?, ?, ?, ?, ?, ?, ?, ?)'''
+        c.execute(sql,(date, ca_code, ca_src, ca_strain[date]["Alpha"], ca_strain[date]["Beta"], ca_strain[date]["Gamma"],ca_strain[date]["Delta"], ca_strain[date]["Omicron"], other_rate))
     conn.commit()
     
     

run_main_initial.py

@@ -219,12 +219,45 @@ c.execute('''CREATE TABLE Strains_Per_Country(
     gamma_rate FLOAT NULL,
     delta_rate FLOAT NULL,
     omicron_rate FLOAT NULL,
+    other_rate FLOAT NULL,
     FOREIGN KEY (country_code) REFERENCES Countries(country_code),
     FOREIGN KEY (source_id) REFERENCES Sources(source_id)
 );
 
         ''')
 
+c.execute('''CREATE TABLE Strains_Per_Region(
+    date_collected DATETIME2 NOT NULL,
+    region_code BIGINT,
+    source_id INT NOT NULL,
+    alpha_rate FLOAT NULL,
+    beta_rate FLOAT NULL,
+    gamma_rate FLOAT NULL,
+    delta_rate FLOAT NULL,
+    omicron_rate FLOAT NULL,
+    other_rate FLOAT NULL,
+    FOREIGN KEY (region_code) REFERENCES Regions(region_code),
+    FOREIGN KEY (source_id) REFERENCES Sources(source_id)
+);
+
+        ''')
+
+c.execute('''CREATE TABLE Strains_Per_District(
+    date_collected DATETIME2 NOT NULL,
+    district_code BIGINT,
+    source_id INT NOT NULL,
+    alpha_rate FLOAT NULL,
+    beta_rate FLOAT NULL,
+    gamma_rate FLOAT NULL,
+    delta_rate FLOAT NULL,
+    omicron_rate FLOAT NULL,
+    other_rate FLOAT NULL,
+    FOREIGN KEY (district_code) REFERENCES Districts(district_code),
+    FOREIGN KEY (source_id) REFERENCES Sources(source_id)
+);
+
+        ''')
+
                   
 conn.commit()