Commit e24563fe authored by Nicasia Beebe-Wang's avatar Nicasia Beebe-Wang
Browse files

Merge branch 'master' of

parents 871c7d9b 0b8f08c1
......@@ -24,6 +24,7 @@ Although knowledge of biological pathways is essential for interpreting results
#### 1. Generating adjacency matrices and curated hierarchies
- **** and **** define adjacency matrices for the MSigDB pathways by measuring the pairwise similarities betweeen pathways from each database and across databases, respectively.
- **adj_matrices** and **curated_labels** folders contain the pathway adjacency matrices and curated labels for each pathway category, respectively.
- **pathway_overlaps.ipynb** is an analysis notebook which measures the overlaps among pathways for the visualization in Figure 1.
#### 2. Comparison of clustering algorithms
- **** is the helper script to run various clustering and community detection algorithms.
Markdown is supported
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment