Commit 0b8f08c1 authored by Nicasia Beebe-Wang's avatar Nicasia Beebe-Wang
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Update README.md

parent f2a3b4a4
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#### 1. Generating adjacency matrices and curated hierarchies
- **gmts_to_adj_matrices.py** and **gmts_to_adj_matrices_offdiagonal.py** define adjacency matrices for the MSigDB pathways by measuring the pairwise similarities betweeen pathways from each database and across databases, respectively.
- **adj_matrices** and **curated_labels** folders contain the pathway adjacency matrices and curated labels for each pathway category, respectively.
- **pathway_overlaps.ipynb** is an analysis notebook which measures the overlaps among pathways for the visualization in Figure 1.
#### 2. Comparison of clustering algorithms
- **algorithm_helpers.py** is the helper script to run various clustering and community detection algorithms.
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